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CCTSI > Informatics > High-Throughput Genetic Analysis
 

High-Throughput Genetic Analysis

We provide experimental design consultation and data analysis services for CCTSI and University of Colorado Cancer Center (CU Cancer Center) members. We specialize in high-throughput data analysis, including microarray and Next Generation Sequencing.

Collaborations include:

  • 454 analyses
    MHC diversity
    Bacterial/fungal diversity
    NEF gene diversity within AIDS patients
  • Illumina analyses
    SNP analyses to determine: causation of disease, phenotypic variation, population differentiation
    Transcription profiling in response to: disease, radiological exposure, heavy metal and/or chemical exposure, gene induction
    Hits-Clip analyses to determine regulation of disease

 Who Are We?

Ken Jones, PhD

Ken JonesAssistant Research Professor, Department of Biochemistry and Molecular Genetics
Co-Director, Biostatistics and Bioinformatics Shared Resource, University of Colorado Cancer Center

Research Interests

As a population geneticist/genomicist, I have successfully completed projects involving a diverse array of taxa including bacteria, fungi, plants, vertebrates, and invertebrates. Through recent projects, I am attempting to uncover the root causes of individual responses to perturbations in their environment using a combination of high-throughput sequencing and traditional genomic approaches (i.e., ecological/environmental genomics). In addition to my own research, a major component of my current position at the University of Colorado Medical School is to collaborate with other researchers, where I assist in the design, implementation, and analysis of next-generation sequencing data.

Tzu Lip Phang, PhD

Tzu PhangDirector, Informatics Educational Support, CCTSI

Research Interests

My primary research activities include microarray and Next Generation Sequencing data analysis, specializing in developing methods for multivariate time course data and Alternative Splicing detection algorithm. Recently, I have developed the interest in studying long non-coding RNA using deep sequencing technology. I am involved with the Consultation and Data Analysis group (CDA) under the umbrella of Colorado Clinical Translational Science Institute (CCTSI) and CU Cancer Center that serves the general bioinformatics needs for the University of Colorado and the Rocky Mountain regions scientific communities. Our goals are to educate and disseminate knowledge and information regarding high-throughput data analysis.

 
 

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